To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MSGFplus")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
This package contains function to perform peptide identification using the MS-GF+ algorithm. The package contains functionality for building up a parameter set both in code and through a simple GUI, as well as running the algorithm in batches, potentially asynchronously.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>
Citation (from within R,
enter citation("MSGFplus")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MSGFplus")
HTML | R Script | Using MSGFgui |
Reference Manual | ||
Text | NEWS |
biocViews | MassSpectrometry, Proteomics, Software |
Version | 1.10.1 |
In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
License | GPL (>= 2) |
Depends | methods |
Imports | mzID, ProtGenerics |
LinkingTo | |
Suggests | gWidgets, knitr, testthat |
SystemRequirements | Java (>= 1.7) |
Enhances | |
URL | |
Depends On Me | |
Imports Me | MSGFgui |
Suggests Me | RforProteomics |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MSGFplus_1.10.1.tar.gz |
Windows Binary | MSGFplus_1.10.1.zip |
Mac OS X 10.11 (El Capitan) | MSGFplus_1.10.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MSGFplus |
Package Short Url | http://bioconductor.org/packages/MSGFplus/ |
Package Downloads Report | Download Stats |
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