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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PanVizGenerator")
In most cases, you don't need to download the package archive at all.
PanVizGenerator
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Generate PanViz visualisations from your pangenome
Bioconductor version: Release (3.5)
PanViz is a JavaScript based visualisation tool for functionaly annotated pangenomes. PanVizGenerator is a companion for PanViz that facilitates the necessary data preprocessing step necessary to create a working PanViz visualization. The output is fully self-contained so the recipient of the visualization does not need R or PanVizGenerator installed.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>
Citation (from within R,
enter citation("PanVizGenerator")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PanVizGenerator")
Documentation
| HTML | R Script | Creating PanViz visualizations with PanVizGenerator |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ComparativeGenomics, GUI, Software, Visualization |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | GPL (>= 2) |
| Depends | methods |
| Imports | shiny, tools, jsonlite, pcaMethods, FindMyFriends, igraph, stats, utils |
| LinkingTo | |
| Suggests | BiocStyle, knitr, rmarkdown, testthat, digest |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/thomasp85/PanVizGenerator |
| BugReports | https://github.com/thomasp85/PanVizGenerator/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PanVizGenerator_1.4.0.tar.gz |
| Windows Binary | PanVizGenerator_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | PanVizGenerator_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PanVizGenerator |
| Package Short Url | http://bioconductor.org/packages/PanVizGenerator/ |
| Package Downloads Report | Download Stats |
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