To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("anamiR")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.
Author: Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]
Maintainer: Ti-Tai Wang <r04945002 at ntu.edu.tw>
Citation (from within R,
enter citation("anamiR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("anamiR")
HTML | R Script | Introduction to anamiR |
Reference Manual | ||
Text | NEWS |
biocViews | AssayDomain, BiologicalQuestion, DifferentialExpression, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Genetics, Microarray, Normalization, Pathways, ResearchField, Sequencing, Software, Technology, WorkflowStep, miRNA |
Version | 1.4.2 |
In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
License | GPL-2 |
Depends | R (>= 3.3.3), SummarizedExperiment(>= 1.1.6) |
Imports | stats, DBI, limma, lumi, agricolae, RMySQL, DESeq2, SummarizedExperiment, gplots, gage, S4Vectors |
LinkingTo | |
Suggests | knitr, rmarkdown, data.table |
SystemRequirements | |
Enhances | |
URL | https://github.com/AllenTiTaiWang/anamiR |
BugReports | https://github.com/AllenTiTaiWang/anamiR/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | anamiR_1.4.2.tar.gz |
Windows Binary | anamiR_1.4.2.zip |
Mac OS X 10.11 (El Capitan) | anamiR_1.4.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/anamiR |
Package Short Url | http://bioconductor.org/packages/anamiR/ |
Package Downloads Report | Download Stats |
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