To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ccmap")
In most cases, you don't need to download the package archive at all.
ccmap
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Combination Connectivity Mapping
Bioconductor version: Release (3.5)
Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.
Author: Alex Pickering
Maintainer: Alex Pickering <alexvpickering at gmail.com>
Citation (from within R,
enter citation("ccmap")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ccmap")
Documentation
| HTML | R Script | ccmap vignette |
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Software, Transcription |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | AnnotationDbi(>= 1.36.2), BiocInstaller(>= 1.24.0), ccdata(>= 1.1.2), doParallel (>= 1.0.10), data.table (>= 1.10.4), foreach (>= 1.4.3), parallel (>= 3.3.3), xgboost (>= 0.6.4), lsa (>= 0.73.1) |
| LinkingTo | |
| Suggests | crossmeta, knitr, rmarkdown, testthat, lydata |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | crossmeta |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ccmap_1.2.0.tar.gz |
| Windows Binary | ccmap_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | ccmap_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ccmap |
| Package Short Url | http://bioconductor.org/packages/ccmap/ |
| Package Downloads Report | Download Stats |
Documentation »
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