To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netReg")
In most cases, you don't need to download the package archive at all.
netReg
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Network-Regularized Regression Models
Bioconductor version: Release (3.5)
netReg fits linear regression models using network-penalization. Graph prior knowledge, in the form of biological networks, is being incorporated into the likelihood of the linear model. The networks describe biological relationships such as co-regulation or dependency of the same transcription factors/metabolites/etc. yielding a part sparse and part smooth solution for coefficient profiles.
Author: Simon Dirmeier [aut, cre]
Maintainer: Simon Dirmeier <mail at simon-dirmeier.net>
Citation (from within R,
enter citation("netReg")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("netReg")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netReg")
| R Script | netReg | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | FeatureExtraction, GraphAndNetwork, Network, Regression, Software, StatisticalMethod |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | Rcpp, stats |
| LinkingTo | Rcpp, RcppArmadillo |
| Suggests | testthat, knitr, rmarkdown, lintr, lassoshooting |
| SystemRequirements | C++11 |
| Enhances | |
| URL | https://github.com/dirmeier/netReg |
| BugReports | https://github.com/dirmeier/netReg/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | netReg_1.0.1.tar.gz |
| Windows Binary | netReg_1.0.1.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | netReg_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/netReg |
| Package Short Url | http://bioconductor.org/packages/netReg/ |
| Package Downloads Report | Download Stats |
Documentation »
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