CSSP

DOI: 10.18129/B9.bioc.CSSP    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see CSSP.

ChIP-Seq Statistical Power

Bioconductor version: 3.8

Power computation for ChIP-Seq data based on Bayesian estimation for local poisson counting process.

Author: Chandler Zuo, Sunduz Keles

Maintainer: Chandler Zuo<zuo at stat.wisc.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("CSSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CSSP")

 

PDF	R Script	cssp.pdf
PDF		Reference Manual

Details

biocViews	Bayesian, ChIPSeq, QualityControl, Sequencing, Software
Version	1.20.0
In Bioconductor since	BioC 2.13 (R-3.0) (5.5 years)
License	GPL-2
Depends
Imports	methods, splines, stats, utils
LinkingTo
Suggests	testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CSSP_1.20.0.tar.gz
Windows Binary	CSSP_1.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	CSSP_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CSSP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CSSP
Package Short Url	http://bioconductor.org/packages/CSSP/
Package Downloads Report	Download Stats