ComplexHeatmap

DOI: 10.18129/B9.bioc.ComplexHeatmap    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.

Making Complex Heatmaps

Bioconductor version: 3.8

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")

 

HTML	R Script	1. Introduction to ComplexHeatmap package
HTML	R Script	2. Making a single heatmap
HTML	R Script	3. Making a list of Heatmaps
HTML	R Script	4. Heatmap Annotations
HTML	R Script	5. Heatmap and Annotation Legends
HTML	R Script	6. Heatmap Decoration
HTML	R Script	7. Interactive with Heatmaps
HTML	R Script	8. OncoPrint
HTML	R Script	9. More Examples
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Sequencing, Software, Visualization
Version	1.20.0
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	MIT + file LICENSE
Depends	R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Imports	circlize (>= 0.4.1), GetoptLong, colorspace, RColorBrewer, GlobalOptions (>= 0.1.0)
LinkingTo
Suggests	testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster, dendextend (>= 1.0.1)
SystemRequirements
Enhances
URL	https://github.com/jokergoo/ComplexHeatmap
Depends On Me	EnrichedHeatmap, recoup
Imports Me	artMS, BiocOncoTK, CATALYST, COCOA, cytofWorkflow, DEComplexDisease, DEGreport, DEP, diffcyt, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, LineagePulse, maftools, MWASTools, PathoStat, singleCellTK, TCGAbiolinks, TCGAWorkflow, YAPSA
Suggests Me	gtrellis, HilbertCurve, TimeSeriesExperiment
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ComplexHeatmap_1.20.0.tar.gz
Windows Binary	ComplexHeatmap_1.20.0.zip
Mac OS X 10.11 (El Capitan)	ComplexHeatmap_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ComplexHeatmap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ComplexHeatmap
Package Short Url	http://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report	Download Stats