DeepBlueR

DOI: 10.18129/B9.bioc.DeepBlueR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see DeepBlueR.

DeepBlueR

Bioconductor version: 3.8

Accessing the DeepBlue Epigenetics Data Server through R.

Author: Felipe Albrecht, Markus List

Maintainer: Felipe Albrecht <felipe.albrecht at mpi-inf.mpg.de>, Markus List <markus.list at wzw.tum.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("DeepBlueR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeepBlueR")

 

HTML	R Script	The DeepBlue epigenomic data server - R package
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, CpGIsland, DNAMethylation, DataImport, DataRepresentation, Epigenetics, GeneRegulation, GenomeAnnotation, ImmunoOncology, Preprocessing, Software, ThirdPartyClient
Version	1.8.1
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	GPL (>=2.0)
Depends	R (>= 3.3), XML, RCurl
Imports	GenomicRanges, data.table, stringr, diffr, dplyr, methods, rjson, utils, R.utils, foreach, withr, rtracklayer, GenomeInfoDb, settings, filehash
LinkingTo
Suggests	knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr, RColorBrewer, matrixStats
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DeepBlueR_1.8.1.tar.gz
Windows Binary	DeepBlueR_1.8.1.zip
Mac OS X 10.11 (El Capitan)	DeepBlueR_1.8.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DeepBlueR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DeepBlueR
Package Short Url	http://bioconductor.org/packages/DeepBlueR/
Package Downloads Report	Download Stats