SMAP

DOI: 10.18129/B9.bioc.SMAP    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see SMAP.

A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling

Bioconductor version: 3.8

Functions and classes for DNA copy number profiling of array-CGH data

Author: Robin Andersson <robin.andersson at lcb.uu.se>

Maintainer: Robin Andersson <robin.andersson at lcb.uu.se>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("SMAP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SMAP")

 

PDF	R Script	SMAP
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software, TwoChannel
Version	1.46.0
In Bioconductor since	BioC 2.1 (R-2.6) (11.5 years)
License	GPL-2
Depends	R (>= 2.10), methods
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SMAP_1.46.0.tar.gz
Windows Binary	SMAP_1.46.0.zip
Mac OS X 10.11 (El Capitan)	SMAP_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SMAP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SMAP
Package Short Url	http://bioconductor.org/packages/SMAP/
Package Downloads Report	Download Stats