affyQCReport

DOI: 10.18129/B9.bioc.affyQCReport    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see affyQCReport.

QC Report Generation for affyBatch objects

Bioconductor version: 3.8

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman

Maintainer: Craig Parman <craig.parman at bifx.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("affyQCReport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyQCReport")

 

PDF	R Script	affyQCReport: Methods for Generating Affymetrix QC Reports
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, Software
Version	1.60.0
In Bioconductor since	BioC 1.7 (R-2.2) (13.5 years)
License	LGPL (>= 2)
Depends	Biobase(>= 1.13.16), affy, lattice
Imports	affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable
LinkingTo
Suggests	tkWidgets(>= 1.5.23), affydata(>= 1.4.1)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	BiocCaseStudies
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affyQCReport_1.60.0.tar.gz
Windows Binary	affyQCReport_1.60.0.zip
Mac OS X 10.11 (El Capitan)	affyQCReport_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affyQCReport
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affyQCReport
Package Short Url	http://bioconductor.org/packages/affyQCReport/
Package Downloads Report	Download Stats