bigmelon

DOI: 10.18129/B9.bioc.bigmelon    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see bigmelon.

Illumina methylation array analysis for large experiments

Bioconductor version: 3.8

Methods for working with Illumina arrays using gdsfmt.

Author: Tyler J. Gorrie-Stone [cre, aut], Ayden Saffari [aut], Karim Malki [aut], Leonard C. Schalkwyk [aut]

Maintainer: Tyler J. Gorrie-Stone <tgorri at essex.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("bigmelon")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bigmelon")

 

PDF	R Script	The bigmelon Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	CpGIsland, DNAMethylation, DataImport, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.8.0
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	GPL-3
Depends	R (>= 3.3), wateRmelon(>= 1.25.0), gdsfmt(>= 1.0.4), methods, minfi(>= 1.21.0), Biobase, methylumi
Imports	stats, utils, GEOquery, graphics, BiocGenerics
LinkingTo
Suggests	BiocGenerics, BiocStyle, minfiData, parallel, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, bumphunter
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bigmelon_1.8.0.tar.gz
Windows Binary	bigmelon_1.8.0.zip
Mac OS X 10.11 (El Capitan)	bigmelon_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bigmelon
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bigmelon
Package Short Url	http://bioconductor.org/packages/bigmelon/
Package Downloads Report	Download Stats