chopsticks

DOI: 10.18129/B9.bioc.chopsticks    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see chopsticks.

The 'snp.matrix' and 'X.snp.matrix' Classes

Bioconductor version: 3.8

Implements classes and methods for large-scale SNP association studies

Author: Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: Hin-Tak Leung <htl10 at users.sourceforge.net>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("chopsticks")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chopsticks")

 

PDF	R Script	snpMatrix
PDF		Reference Manual

Details

biocViews	GeneticVariability, Microarray, SNP, SNPsAndGeneticVariability, Software
Version	1.48.0
In Bioconductor since	BioC 2.8 (R-2.13) (8 years)
License	GPL-3
Depends
Imports	graphics, stats, utils, methods, survival
LinkingTo
Suggests	hexbin
SystemRequirements
Enhances
URL	http://outmodedbonsai.sourceforge.net/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chopsticks_1.48.0.tar.gz
Windows Binary	chopsticks_1.48.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	chopsticks_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chopsticks
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/chopsticks
Package Short Url	http://bioconductor.org/packages/chopsticks/
Package Downloads Report	Download Stats