gcatest

DOI: 10.18129/B9.bioc.gcatest    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see gcatest.

Genotype Conditional Association TEST

Bioconductor version: 3.8

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gcatest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gcatest")

 

PDF	R Script	gcat Package
PDF		Reference Manual

Details

biocViews	DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software
Version	1.12.0
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	GPL-3
Depends	R (>= 3.2)
Imports	lfa
LinkingTo
Suggests	knitr, ggplot2
SystemRequirements
Enhances
URL	https://github.com/StoreyLab/gcatest
BugReports	https://github.com/StoreyLab/gcatest/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gcatest_1.12.0.tar.gz
Windows Binary	gcatest_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	gcatest_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gcatest
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gcatest
Package Short Url	http://bioconductor.org/packages/gcatest/
Package Downloads Report	Download Stats