genbankr

DOI: 10.18129/B9.bioc.genbankr    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see genbankr.

Parsing GenBank files into semantically useful objects

Bioconductor version: 3.8

Reads Genbank files.

Author: Gabriel Becker [aut, cre], Michael Lawrence [aut]

Maintainer: Gabriel Becker <becker.gabriel at gene.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("genbankr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genbankr")

 

HTML	R Script	An introduction to genbankr
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software
Version	1.10.0
In Bioconductor since	BioC 3.3 (R-3.3) (3 years)
License	Artistic-2.0
Depends	methods
Imports	BiocGenerics, IRanges(>= 2.13.15), GenomicRanges(>= 1.31.10), GenomicFeatures(>= 1.31.5), Biostrings, VariantAnnotation, rtracklayer, S4Vectors(>= 0.17.28), GenomeInfoDb, Biobase
LinkingTo
Suggests	RUnit, rentrez, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	genbankr_1.10.0.tar.gz
Windows Binary	genbankr_1.10.0.zip
Mac OS X 10.11 (El Capitan)	genbankr_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/genbankr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/genbankr
Package Short Url	http://bioconductor.org/packages/genbankr/
Package Downloads Report	Download Stats