multiMiR

DOI: 10.18129/B9.bioc.multiMiR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see multiMiR.

Integration of multiple microRNA-target databases with their disease and drug associations

Bioconductor version: 3.8

A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).

Author: Yuanbin Ru [aut], Matt Mulvahill [cre, aut], Spencer Mahaffey [aut], Katerina Kechris [aut, cph, ths]

Maintainer: Matt Mulvahill <matthew.mulvahill at ucdenver.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("multiMiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiMiR")

 

HTML	R Script	The multiMiR user's guide
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Homo_sapiens_Data, Mus_musculus_Data, OrganismData, Rattus_norvegicus_Data, Software, miRNAData
Version	1.4.0
In Bioconductor since	BioC 3.6 (R-3.4) (1.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.4)
Imports	stats, XML, RCurl, purrr (>= 0.2.2), tibble (>= 1.2), methods, BiocGenerics, AnnotationDbi, dplyr
LinkingTo
Suggests	BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2)
SystemRequirements
Enhances
URL	https://github.com/KechrisLab/multiMiR
BugReports	https://github.com/KechrisLab/multiMiR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	multiMiR_1.4.0.tar.gz
Windows Binary	multiMiR_1.4.0.zip
Mac OS X 10.11 (El Capitan)	multiMiR_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/multiMiR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/multiMiR
Package Short Url	http://bioconductor.org/packages/multiMiR/
Package Downloads Report	Download Stats