savR

DOI: 10.18129/B9.bioc.savR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see savR.

Parse and analyze Illumina SAV files

Bioconductor version: 3.8

Parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Author: R. Brent Calder

Maintainer: R. Brent Calder <brent.calder at einstein.yu.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("savR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("savR")

 

PDF	R Script	Using savR
PDF		Reference Manual

Details

biocViews	Sequencing, Software
Version	1.20.0
In Bioconductor since	BioC 2.14 (R-3.1) (5 years)
License	AGPL-3
Depends	ggplot2
Imports	methods, reshape2, scales, gridExtra, XML
LinkingTo
Suggests	Cairo, testthat
SystemRequirements
Enhances
URL	https://github.com/bcalder/savR
BugReports	https://github.com/bcalder/savR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	savR_1.20.0.tar.gz
Windows Binary	savR_1.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	savR_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/savR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/savR
Package Short Url	http://bioconductor.org/packages/savR/
Package Downloads Report	Download Stats