tRNAdbImport

DOI: 10.18129/B9.bioc.tRNAdbImport    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see tRNAdbImport.

Importing from tRNAdb and mitotRNAdb as GRanges objects

Bioconductor version: 3.8

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.

Author: Felix GM Ernst [aut, cre]

Maintainer: Felix GM Ernst <felix.gm.ernst at outlook.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("tRNAdbImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAdbImport")

 

HTML	R Script	tRNAdbImport
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.8 (R-3.5) (0.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.5), GenomicRanges, tRNA
Imports	Biostrings, stringr, xml2, S4Vectors, assertive, methods, httr, IRanges, utils
LinkingTo
Suggests	knitr, rmarkdown, testthat, httptest, BiocStyle, rtracklayer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tRNAdbImport_1.0.0.tar.gz
Windows Binary	tRNAdbImport_1.0.0.zip
Mac OS X 10.11 (El Capitan)	tRNAdbImport_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tRNAdbImport
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tRNAdbImport
Package Short Url	http://bioconductor.org/packages/tRNAdbImport/
Package Downloads Report	Download Stats