AshkenazimSonChr21

DOI: 10.18129/B9.bioc.AshkenazimSonChr21    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see AshkenazimSonChr21.

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

Bioconductor version: 3.8

SonVariantsChr21 is a dataset of annotated genomic variants coming from Complete Genomics whole genome sequencing. Data comes from GIAB project, Ashkenazim Trio, sample HG002 run 1. Both vcf and annotated data frame are provided.

Author: Tomasz Stokowy

Maintainer: Who to complain to <tomasz.stokowy at k2.uib.no>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("AshkenazimSonChr21")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AshkenazimSonChr21")

 

PDF	R Script	RareVariantVis
PDF		Reference Manual

Details

biocViews	ExperimentData, GenomicVariation, Sequencing, WholeGenome
Version	1.12.0
License	Artistic-2.0
Depends
Imports
LinkingTo
Suggests	knitr, VariantAnnotation
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AshkenazimSonChr21_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/AshkenazimSonChr21
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AshkenazimSonChr21
Package Short Url	http://bioconductor.org/packages/AshkenazimSonChr21/
Package Downloads Report	Download Stats