cgdv17

DOI: 10.18129/B9.bioc.cgdv17    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see cgdv17.

Complete Genomics Diversity Panel, chr17 on 46 individuals

Bioconductor version: 3.8

Complete Genomics Diversity Panel, chr17 on 46 individuals

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("cgdv17")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cgdv17")

 

PDF	R Script	cgdv17: extract from Complete Genomics diversity panel
PDF		Reference Manual

Details

biocViews	BiocViews, ExperimentData, SNPData, SequencingData
Version	0.20.0
License	Artistic-2.0
Depends	R (>= 2.15), methods, VariantAnnotation(>= 1.15.15)
Imports	BiocGenerics, S4Vectors, IRanges, GenomicRanges, Biobase
LinkingTo
Suggests	parallel, GGtools, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, illuminaHumanv1.db
SystemRequirements
Enhances
URL
Depends On Me	variants
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cgdv17_0.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/cgdv17
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cgdv17
Package Short Url	http://bioconductor.org/packages/cgdv17/
Package Downloads Report	Download Stats