AffyExpress

DOI: 10.18129/B9.bioc.AffyExpress    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see AffyExpress.

Affymetrix Quality Assessment and Analysis Tool

Bioconductor version: 3.9

The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.

Author: Xiwei Wu <xwu at coh.org>, Xuejun Arthur Li <xueli at coh.org>

Maintainer: Xuejun Arthur Li <xueli at coh.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AffyExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyExpress")

 

PDF	R Script	1. Primer
PDF		Reference Manual

Details

biocViews	Annotation, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Visualization
Version	1.50.0
In Bioconductor since	BioC 2.1 (R-2.6) (12 years)
License	LGPL
Depends	R (>= 2.10), affy(>= 1.23.4), limma
Imports
LinkingTo
Suggests	simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AffyExpress_1.50.0.tar.gz
Windows Binary	AffyExpress_1.50.0.zip
Mac OS X 10.11 (El Capitan)	AffyExpress_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AffyExpress
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AffyExpress
Package Short Url	https://bioconductor.org/packages/AffyExpress/
Package Downloads Report	Download Stats