ArrayExpress

DOI: 10.18129/B9.bioc.ArrayExpress    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: 3.9

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert

Maintainer: Suhaib Mohammed <suhaib at ebi.ac.uk>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")

 

PDF	R Script	ArrayExpress: Import and convert ArrayExpress data sets into R object
PDF		Reference Manual

Details

biocViews	DataImport, Microarray, OneChannel, Software, TwoChannel
Version	1.44.0
In Bioconductor since	BioC 2.3 (R-2.8) (11 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), Biobase(>= 2.4.0)
Imports	XML, oligo, limma
LinkingTo
Suggests	affy
SystemRequirements
Enhances
URL
Depends On Me	DrugVsDisease, maEndToEnd
Imports Me
Suggests Me	gCMAPWeb, Hiiragi2013
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ArrayExpress_1.44.0.tar.gz
Windows Binary	ArrayExpress_1.44.0.zip
Mac OS X 10.11 (El Capitan)	ArrayExpress_1.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ArrayExpress
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ArrayExpress
Package Short Url	https://bioconductor.org/packages/ArrayExpress/
Package Downloads Report	Download Stats