CALIB

DOI: 10.18129/B9.bioc.CALIB    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CALIB.

Calibration model for estimating absolute expression levels from microarray data

Bioconductor version: 3.9

This package contains functions for normalizing spotted microarray data, based on a physically motivated calibration model. The model parameters and error distributions are estimated from external control spikes.

Author: Hui Zhao, Kristof Engelen, Bart De Moor and Kathleen Marchal

Maintainer: Hui Zhao <hui.zhao at biw.kuleuven.be>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CALIB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CALIB")

 

PDF	R Script	CALIB Overview
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software, TwoChannel
Version	1.50.0
In Bioconductor since	BioC 2.0 (R-2.5) (12.5 years)
License	LGPL
Depends	R (>= 2.10), limma, methods
Imports	limma, methods, graphics, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CALIB_1.50.0.tar.gz
Windows Binary	CALIB_1.50.0.zip
Mac OS X 10.11 (El Capitan)	CALIB_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CALIB
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CALIB
Package Short Url	https://bioconductor.org/packages/CALIB/
Package Downloads Report	Download Stats