ChIPsim

DOI: 10.18129/B9.bioc.ChIPsim    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ChIPsim.

Simulation of ChIP-seq experiments

Bioconductor version: 3.9

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPsim")

 

PDF	R Script	Simulating ChIP-seq experiments
PDF		Reference Manual

Details

biocViews	ChIPSeq, Infrastructure, Software
Version	1.38.0
In Bioconductor since	BioC 2.5 (R-2.10) (10 years)
License	GPL (>= 2)
Depends	Biostrings(>= 2.29.2)
Imports	IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils
LinkingTo
Suggests	actuar, zoo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ChIPsim_1.38.0.tar.gz
Windows Binary	ChIPsim_1.38.0.zip
Mac OS X 10.11 (El Capitan)	ChIPsim_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ChIPsim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ChIPsim
Package Short Url	https://bioconductor.org/packages/ChIPsim/
Package Downloads Report	Download Stats