CoRegFlux

DOI: 10.18129/B9.bioc.CoRegFlux    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CoRegFlux.

CoRegFlux

Bioconductor version: 3.9

CoRegFlux aims at providing tools to integrate reverse engineered gene regulatory networks and gene-expression into metabolic models to improve prediction of phenotypes, both for metabolic engineering, through transcription factor or gene (TF) knock-out or overexpression in various conditions as well as to improve our understanding of the interactions and cell inner-working.

Author: Pauline Trébulle, Daniel Trejo-Banos, Mohamed Elati

Maintainer: Pauline Trébulle and Mohamed Elati <coregflux at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CoRegFlux")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoRegFlux")

 

HTML	R Script	CoRegFlux
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, GenePrediction, GeneRegulation, Network, Software, SystemsBiology, Transcription
Version	1.0.0
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	GPL-3
Depends	R (>= 3.6)
Imports	CoRegNet, sybil
LinkingTo
Suggests	glpkAPI, testthat, knitr, rmarkdown, digest, R.cache, ggplot2, plyr, igraph, methods, latex2exp, rBayesianOptimization
SystemRequirements	GLPK (>= 4.42)
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CoRegFlux_1.0.0.tar.gz
Windows Binary	CoRegFlux_1.0.0.zip
Mac OS X 10.11 (El Capitan)	CoRegFlux_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CoRegFlux
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CoRegFlux
Package Short Url	https://bioconductor.org/packages/CoRegFlux/
Package Downloads Report	Download Stats