EBSeq

DOI: 10.18129/B9.bioc.EBSeq    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see EBSeq.

An R package for gene and isoform differential expression analysis of RNA-seq data

Bioconductor version: 3.9

Differential Expression analysis at both gene and isoform level using RNA-seq data

Author: Ning Leng, Christina Kendziorski

Maintainer: Ning Leng <lengning1 at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSeq")

 

PDF	R Script	EBSeq Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, StatisticalMethod
Version	1.24.0
In Bioconductor since	BioC 2.13 (R-3.0) (6 years)
License	Artistic-2.0
Depends	blockmodeling, gplots, testthat, R (>= 3.0.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	EBSeqHMM, Oscope
Imports Me	DEsubs, scDD
Suggests Me	compcodeR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EBSeq_1.24.0.tar.gz
Windows Binary	EBSeq_1.24.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	EBSeq_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EBSeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EBSeq
Package Short Url	https://bioconductor.org/packages/EBSeq/
Package Downloads Report	Download Stats