FELLA

DOI: 10.18129/B9.bioc.FELLA    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see FELLA.

Interpretation and enrichment for metabolomics data

Bioconductor version: 3.9

Enrichment of metabolomics data using KEGG entries. Given a set of affected compounds, FELLA suggests affected reactions, enzymes, modules and pathways using label propagation in a knowledge model network. The resulting subnetwork can be visualised and exported.

Author: Sergio Picart-Armada [aut, cre], Francesc Fernandez-Albert [aut], Alexandre Perera-Lluna [aut]

Maintainer: Sergio Picart-Armada <sergi.picart at upc.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FELLA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FELLA")

 

PDF	R Script	Example: a fatty liver study on Mus musculus
PDF	R Script	Example: oxybenzone exposition in gilt-head bream
PDF	R Script	FELLA
HTML	R Script	Quick start
PDF		Reference Manual
Text		NEWS

Details

biocViews	GO, GraphAndNetwork, KEGG, Metabolomics, Network, NetworkEnrichment, Pathways, Software
Version	1.4.1
In Bioconductor since	BioC 3.7 (R-3.5) (1.5 years)
License	GPL-3
Depends	R (>= 3.5.0)
Imports	methods, igraph, Matrix, KEGGREST, plyr, stats, graphics, utils
LinkingTo
Suggests	shiny, DT, magrittr, visNetwork, knitr, BiocStyle, rmarkdown, testthat, biomaRt, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, GOSemSim
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	FELLA_1.4.1.tar.gz
Windows Binary	FELLA_1.4.1.zip
Mac OS X 10.11 (El Capitan)	FELLA_1.4.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/FELLA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/FELLA
Package Short Url	https://bioconductor.org/packages/FELLA/
Package Downloads Report	Download Stats