MBAmethyl

DOI: 10.18129/B9.bioc.MBAmethyl    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MBAmethyl.

Model-based analysis of DNA methylation data

Bioconductor version: 3.9

This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

Author: Tao Wang, Mengjie Chen

Maintainer: Tao Wang <tao.wang.tw376 at yale.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MBAmethyl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBAmethyl")

 

PDF	R Script	MBAmethyl Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, MethylationArray, Software
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (5 years)
License	Artistic-2.0
Depends	R (>= 2.15)
Imports
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Depends On Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MBAmethyl_1.18.0.tar.gz
Windows Binary	MBAmethyl_1.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	MBAmethyl_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MBAmethyl
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MBAmethyl
Package Short Url	https://bioconductor.org/packages/MBAmethyl/
Package Downloads Report	Download Stats