MultiDataSet

DOI: 10.18129/B9.bioc.MultiDataSet    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MultiDataSet.

Implementation of MultiDataSet and ResultSet

Bioconductor version: 3.9

Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and ResultSet. MultiDataSet is designed for integrating multi omics data sets and ResultSet is a container for omics results. This package contains base classes for MEAL and rexposome packages.

Author: Carlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]

Maintainer: Carlos Ruiz-Arenas <carlos.ruiz at isglobal.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultiDataSet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiDataSet")

 

HTML	R Script	Adding a new type of data to MultiDataSet objects
HTML	R Script	Introduction to MultiDataSet
HTML	R Script	Using MultiDataSet with third party R packages
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataRepresentation, Software
Version	1.12.0
In Bioconductor since	BioC 3.3 (R-3.3) (3.5 years)
License	file LICENSE
Depends	R (>= 3.3), Biobase
Imports	BiocGenerics, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, methods, utils, ggplot2, ggrepel, qqman, limma
LinkingTo
Suggests	brgedata, minfi, minfiData, knitr, rmarkdown, testthat, omicade4, iClusterPlus, GEOquery, MultiAssayExperiment, BiocStyle, RaggedExperiment
SystemRequirements
Enhances
URL
Depends On Me	MEAL
Imports Me	omicRexposome
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MultiDataSet_1.12.0.tar.gz
Windows Binary	MultiDataSet_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	MultiDataSet_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MultiDataSet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MultiDataSet
Package Short Url	https://bioconductor.org/packages/MultiDataSet/
Package Downloads Report	Download Stats