NOISeq

DOI: 10.18129/B9.bioc.NOISeq    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see NOISeq.

Exploratory analysis and differential expression for RNA-seq data

Bioconductor version: 3.9

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

Author: Sonia Tarazona, Pedro Furio-Tari, Maria Jose Nueda, Alberto Ferrer and Ana Conesa

Maintainer: Sonia Tarazona <starazona at cipf.es>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NOISeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NOISeq")

 

PDF	R Script	NOISeq User's Guide
PDF		QCreport.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization
Version	2.28.0
In Bioconductor since	BioC 2.11 (R-2.15) (7 years)
License	Artistic-2.0
Depends	R (>= 2.13.0), methods, Biobase(>= 2.13.11), splines (>= 3.0.1), Matrix (>= 1.2)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	metaSeq
Imports Me	CNVPanelizer, metaseqR
Suggests Me	compcodeR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NOISeq_2.28.0.tar.gz
Windows Binary	NOISeq_2.28.0.zip
Mac OS X 10.11 (El Capitan)	NOISeq_2.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/NOISeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NOISeq
Package Short Url	https://bioconductor.org/packages/NOISeq/
Package Downloads Report	Download Stats