NuPoP

DOI: 10.18129/B9.bioc.NuPoP    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see NuPoP.

An R package for nucleosome positioning prediction

Bioconductor version: 3.9

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.

Author: Ji-Ping Wang <jzwang at northwestern.edu>; Liqun Xi <lxi700 at northwestern.edu>

Maintainer: Ji-Ping Wang<jzwang at northwestern.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NuPoP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NuPoP")

 

PDF	R Script	An R package for Nucleosome positioning prediction
PDF		Reference Manual

Details

biocViews	Classification, Genetics, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 2.7 (R-2.12) (9 years)
License	GPL-2
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	nuCpos
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NuPoP_1.34.0.tar.gz
Windows Binary	NuPoP_1.34.0.zip
Mac OS X 10.11 (El Capitan)	NuPoP_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/NuPoP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/NuPoP
Package Short Url	https://bioconductor.org/packages/NuPoP/
Package Downloads Report	Download Stats