RnaSeqSampleSize

DOI: 10.18129/B9.bioc.RnaSeqSampleSize    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RnaSeqSampleSize.

RnaSeqSampleSize

Bioconductor version: 3.9

RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data

Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr

Maintainer: Shilin Zhao <zhaoshilin at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RnaSeqSampleSize")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RnaSeqSampleSize")

 

PDF	R Script	RnaSeqSampleSize: Sample size estimation by real data
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, ExperimentalDesign, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version	1.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (4.5 years)
License	GPL (>= 2)
Depends	R (>= 2.10), RnaSeqSampleSizeData
Imports	biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2)
LinkingTo	Rcpp
Suggests	BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RnaSeqSampleSize_1.16.0.tar.gz
Windows Binary	RnaSeqSampleSize_1.16.0.zip
Mac OS X 10.11 (El Capitan)	RnaSeqSampleSize_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RnaSeqSampleSize
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RnaSeqSampleSize
Package Short Url	https://bioconductor.org/packages/RnaSeqSampleSize/
Package Downloads Report	Download Stats