SELEX

DOI: 10.18129/B9.bioc.SELEX    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SELEX.

Functions for analyzing SELEX-seq data

Bioconductor version: 3.9

Tools for quantifying DNA binding specificities based on SELEX-seq data

Author: Chaitanya Rastogi, Dahong Liu, and Harmen Bussemaker

Maintainer: Harmen Bussemaker <hjb2004 at columbia.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SELEX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SELEX")

 

PDF	R Script	Motif Discovery with SELEX-seq
PDF		Reference Manual

Details

biocViews	GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version	1.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (4.5 years)
License	GPL (>=2)
Depends	R (>= 2.7.0), rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports
LinkingTo
Suggests
SystemRequirements	Java (>= 1.5)
Enhances
URL	http://bussemakerlab.org/software/SELEX/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SELEX_1.16.0.tar.gz
Windows Binary	SELEX_1.16.0.zip
Mac OS X 10.11 (El Capitan)	SELEX_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SELEX
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SELEX
Package Short Url	https://bioconductor.org/packages/SELEX/
Package Downloads Report	Download Stats