SQUADD

DOI: 10.18129/B9.bioc.SQUADD    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SQUADD.

Add-on of the SQUAD Software

Bioconductor version: 3.9

This package SQUADD is a SQUAD add-on. It permits to generate SQUAD simulation matrix, prediction Heat-Map and Correlation Circle from PCA analysis.

Author: Martial Sankar, supervised by Christian Hardtke and Ioannis Xenarios

Maintainer: Martial Sankar <martial.sankar at sib.swiss>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SQUADD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SQUADD")

 

PDF	R Script	SQUADD ERK exemple
PDF	R Script	SQUADD HOW-TO
PDF		Reference Manual

Details

biocViews	GraphAndNetwork, Network, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 2.7 (R-2.12) (9 years)
License	GPL (>=2)
Depends	R (>= 2.11.0)
Imports	graphics, grDevices, methods, RColorBrewer, stats, utils
LinkingTo
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URL	http://www.unil.ch/dbmv/page21142_en.html
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SQUADD_1.34.0.tar.gz
Windows Binary	SQUADD_1.34.0.zip
Mac OS X 10.11 (El Capitan)	SQUADD_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SQUADD
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SQUADD
Package Short Url	https://bioconductor.org/packages/SQUADD/
Package Downloads Report	Download Stats