SVM2CRM

DOI: 10.18129/B9.bioc.SVM2CRM    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SVM2CRM.

SVM2CRM: support vector machine for cis-regulatory elements detections

Bioconductor version: 3.9

Detection of cis-regulatory elements using svm implemented in LiblineaR.

Author: Guidantonio Malagoli Tagliazucchi <malagoli at ingm.org>

Maintainer: Guidantonio Malagoli Tagliazucchi <guidantonio.malagolitagliazucchi at unimore.it>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SVM2CRM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SVM2CRM")

 

PDF	R Script	The \Rpackage{SVM2CRM} Package
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	ChIPSeq, ChipOnChip, Preprocessing, Software, SupportVectorMachine
Version	1.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (4.5 years)
License	GPL-3
Depends	R (>= 3.2.0), LiblineaR, SVM2CRMdata
Imports	AnnotationDbi, mclust, GenomicRanges, IRanges, zoo, squash, pls, rtracklayer, ROCR, verification
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SVM2CRM_1.16.0.tar.gz
Windows Binary	SVM2CRM_1.16.0.zip
Mac OS X 10.11 (El Capitan)	SVM2CRM_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SVM2CRM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SVM2CRM
Package Short Url	https://bioconductor.org/packages/SVM2CRM/
Package Downloads Report	Download Stats