TCseq

DOI: 10.18129/B9.bioc.TCseq    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TCseq.

Time course sequencing data analysis

Bioconductor version: 3.9

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.

Author: Mengjun Wu <minervajunjun at gmail.com>, Lei Gu <leigu at broadinstitute.org>

Maintainer: Mengjun Wu <minervajunjun at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TCseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCseq")

 

PDF	R Script	TCseq Vignette
PDF		Reference Manual

Details

biocViews	ChIPSeq, Clustering, DifferentialExpression, Epigenetics, RNASeq, Sequencing, Software, TimeCourse, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.5 (R-3.4) (2.5 years)
License	GPL (>= 2)
Depends	R (>= 3.4)
Imports	edgeR, BiocGenerics, reshape2, GenomicRanges, IRanges, SummarizedExperiment, GenomicAlignments, Rsamtools, e1071, cluster, ggplot2, grid, grDevices, stats, utils, methods, locfit
LinkingTo
Suggests	testthat
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TCseq_1.8.0.tar.gz
Windows Binary	TCseq_1.8.0.zip
Mac OS X 10.11 (El Capitan)	TCseq_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TCseq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TCseq
Package Short Url	https://bioconductor.org/packages/TCseq/
Package Downloads Report	Download Stats