TnT

DOI: 10.18129/B9.bioc.TnT    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TnT.

Interactive Visualization for Genomic Features

Bioconductor version: 3.9

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Author: Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

Maintainer: Jialin Ma <marlin- at gmx.cn>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TnT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TnT")

 

HTML	R Script	Introduction to TnT
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software, Visualization
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	AGPL-3
Depends	R (>= 3.4), GenomicRanges
Imports	methods, stats, utils, grDevices, htmlwidgets, jsonlite, data.table, Biobase, GenomeInfoDb, IRanges, S4Vectors, knitr
LinkingTo
Suggests	GenomicFeatures, shiny, BiocManager, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/Marlin-Na/TnT
BugReports	https://github.com/Marlin-Na/TnT/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TnT_1.6.0.tar.gz
Windows Binary	TnT_1.6.0.zip
Mac OS X 10.11 (El Capitan)	TnT_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TnT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TnT
Package Short Url	https://bioconductor.org/packages/TnT/
Package Downloads Report	Download Stats