TreeSummarizedExperiment

DOI: 10.18129/B9.bioc.TreeSummarizedExperiment    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TreeSummarizedExperiment.

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures

Bioconductor version: 3.9

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.

Author: Ruizhu Huang [aut, cre]

Maintainer: Ruizhu Huang <ruizhuRH at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TreeSummarizedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeSummarizedExperiment")

 

HTML	R Script	Tree Aggregation
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	1.0.3
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	GPL (>=2)
Depends	R (>= 3.6.0), SingleCellExperiment, S4Vectors
Imports	methods, utils, ape, dplyr, SummarizedExperiment
LinkingTo
Suggests	ggtree, BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TreeSummarizedExperiment_1.0.3.tar.gz
Windows Binary	TreeSummarizedExperiment_1.0.3.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	TreeSummarizedExperiment_1.0.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TreeSummarizedExperiment
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TreeSummarizedExperiment
Package Short Url	https://bioconductor.org/packages/TreeSummarizedExperiment/
Package Downloads Report	Download Stats