altcdfenvs

DOI: 10.18129/B9.bioc.altcdfenvs    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see altcdfenvs.

alternative CDF environments (aka probeset mappings)

Bioconductor version: 3.9

Convenience data structures and functions to handle cdfenvs

Author: Laurent Gautier <lgautier at gmail.com>

Maintainer: Laurent Gautier <lgautier at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("altcdfenvs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("altcdfenvs")

 

PDF	R Script	altcdfenvs
PDF	R Script	Alternative CDF environments for 2(or more)-genomes chips
PDF	R Script	Modifying existing CDF environments to make alternative CDF environments
PDF		Reference Manual

Details

biocViews	Annotation, Microarray, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Software, Transcription
Version	2.46.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License	GPL (>= 2)
Depends	R (>= 2.7), methods, BiocGenerics(>= 0.1.0), S4Vectors(>= 0.9.25), Biobase(>= 2.15.1), affy, makecdfenv, Biostrings, hypergraph
Imports
LinkingTo
Suggests	plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	Harshlight
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	altcdfenvs_2.46.0.tar.gz
Windows Binary	altcdfenvs_2.46.0.zip
Mac OS X 10.11 (El Capitan)	altcdfenvs_2.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/altcdfenvs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/altcdfenvs
Package Short Url	https://bioconductor.org/packages/altcdfenvs/
Package Downloads Report	Download Stats