anamiR

DOI: 10.18129/B9.bioc.anamiR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see anamiR.

An integrated analysis package of miRNA and mRNA expression data

Bioconductor version: 3.9

This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.

Author: Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]

Maintainer: Ti-Tai Wang <r04945002 at ntu.edu.tw>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("anamiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("anamiR")

 

HTML	R Script	Introduction to anamiR
PDF		Reference Manual
Text		NEWS

Details

biocViews	AssayDomain, BiologicalQuestion, DifferentialExpression, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Genetics, Microarray, Normalization, Pathways, ResearchField, Sequencing, Software, Technology, WorkflowStep, miRNA
Version	1.12.0
In Bioconductor since	BioC 3.4 (R-3.3) (3 years)
License	GPL-2
Depends	R (>= 3.5)
Imports	stats, DBI, limma, lumi, agricolae, RMySQL, DESeq2, SummarizedExperiment, gplots, gage, S4Vectors
LinkingTo
Suggests	knitr, rmarkdown, data.table
SystemRequirements
Enhances
URL	https://github.com/AllenTiTaiWang/anamiR
BugReports	https://github.com/AllenTiTaiWang/anamiR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	anamiR_1.12.0.tar.gz
Windows Binary	anamiR_1.12.0.zip
Mac OS X 10.11 (El Capitan)	anamiR_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/anamiR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/anamiR
Package Short Url	https://bioconductor.org/packages/anamiR/
Package Downloads Report	Download Stats