cbaf

DOI: 10.18129/B9.bioc.cbaf    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see cbaf.

Automated functions for comparing various data from cbioportal.org

Bioconductor version: 3.9

This package contains functions that allow analysing and comparing various gene groups from different cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.

Author: Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]

Maintainer: Arman Shahrisa <shahrisa.arman at hotmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cbaf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cbaf")

 

HTML	R Script	cbaf
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Microarray, RNASeq, Software, microRNASeq
Version	1.6.0
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	Artistic-2.0
Depends
Imports	BiocFileCache, RColorBrewer, cgdsr, genefilter, gplots, grDevices, stats, utils, xlsx
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cbaf_1.6.0.tar.gz
Windows Binary	cbaf_1.6.0.zip
Mac OS X 10.11 (El Capitan)	cbaf_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cbaf
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cbaf
Package Short Url	https://bioconductor.org/packages/cbaf/
Package Downloads Report	Download Stats