chromPlot

DOI: 10.18129/B9.bioc.chromPlot    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see chromPlot.

Global visualization tool of genomic data

Bioconductor version: 3.9

Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Author: Ricardo A. Verdugo and Karen Y. Orostica

Maintainer: Karen Y. Orostica <korostica09 at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chromPlot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromPlot")

 

PDF	R Script	General Manual
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, DataRepresentation, FunctionalGenomics, Genetics, Sequencing, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 3.3 (R-3.3) (3.5 years)
License	GPL (>= 2)
Depends	stats, utils, graphics, grDevices, datasets, base, biomaRt, GenomicRanges, R (>= 3.1.0)
Imports
LinkingTo
Suggests	qtl, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chromPlot_1.12.0.tar.gz
Windows Binary	chromPlot_1.12.0.zip
Mac OS X 10.11 (El Capitan)	chromPlot_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chromPlot
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/chromPlot
Package Short Url	https://bioconductor.org/packages/chromPlot/
Package Downloads Report	Download Stats