diffcoexp

DOI: 10.18129/B9.bioc.diffcoexp    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see diffcoexp.

Differential Co-expression Analysis

Bioconductor version: 3.9

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Author: Wenbin Wei, Sandeep Amberkar, Winston Hide

Maintainer: Wenbin Wei <W.Wei at sheffield.ac.uk>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("diffcoexp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diffcoexp")

 

PDF	R Script	About diffcoexp
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, OneChannel, RNASeq, Sequencing, Software, Transcription, TwoChannel
Version	1.4.0
In Bioconductor since	BioC 3.7 (R-3.5) (1.5 years)
License	GPL (>2)
Depends	R (>= 3.5), WGCNA, SummarizedExperiment
Imports	stats, DiffCorr, psych, igraph, BiocGenerics
LinkingTo
Suggests	GEOquery
SystemRequirements
Enhances
URL	https://github.com/hidelab/diffcoexp
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	diffcoexp_1.4.0.tar.gz
Windows Binary	diffcoexp_1.4.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	diffcoexp_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/diffcoexp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/diffcoexp
Package Short Url	https://bioconductor.org/packages/diffcoexp/
Package Downloads Report	Download Stats