gtrellis

DOI: 10.18129/B9.bioc.gtrellis    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see gtrellis.

Genome Level Trellis Layout

Bioconductor version: 3.9

Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gtrellis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gtrellis")

 

HTML	R Script	Make Genome-level Trellis Graph
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Sequencing, Software, Visualization
Version	1.16.1
In Bioconductor since	BioC 3.1 (R-3.2) (4.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.1.2), grid, IRanges, GenomicRanges
Imports	circlize (>= 0.4.8), GetoptLong, grDevices, utils
LinkingTo
Suggests	testthat (>= 1.0.0), knitr, RColorBrewer, markdown, ComplexHeatmap(>= 1.99.0), Cairo, png, jpeg, tiff
SystemRequirements
Enhances
URL	https://github.com/jokergoo/gtrellis
Depends On Me
Imports Me	YAPSA
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gtrellis_1.16.1.tar.gz
Windows Binary	gtrellis_1.16.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	gtrellis_1.16.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gtrellis
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gtrellis
Package Short Url	https://bioconductor.org/packages/gtrellis/
Package Downloads Report	Download Stats