This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ivygapSE.
Bioconductor version: 3.9
Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.
Author: Vince Carey
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R,
enter citation("ivygapSE")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ivygapSE")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ivygapSE")
HTML | R Script | ivygapSE -- SummarizedExperiment for Ivy-GAP |
Reference Manual |
biocViews | GeneExpression, Sequencing, Software, Survival, Transcription, Visualization |
Version | 1.6.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (2 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), SummarizedExperiment |
Imports | shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR |
LinkingTo | |
Suggests | knitr, png, limma, grid, DT, randomForest, digest, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | ivygapSE_1.6.0.tar.gz |
Windows Binary | ivygapSE_1.6.0.zip |
Mac OS X 10.11 (El Capitan) | ivygapSE_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ivygapSE |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ivygapSE |
Package Short Url | https://bioconductor.org/packages/ivygapSE/ |
Package Downloads Report | Download Stats |
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