lmdme

DOI: 10.18129/B9.bioc.lmdme    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see lmdme.

Linear Model decomposition for Designed Multivariate Experiments

Bioconductor version: 3.9

linear ANOVA decomposition of Multivariate Designed Experiments implementation based on limma lmFit. Features: i)Flexible formula type interface, ii) Fast limma based implementation, iii) p-values for each estimated coefficient levels in each factor, iv) F values for factor effects and v) plotting functions for PCA and PLS.

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("lmdme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lmdme")

 

PDF	R Script	lmdme: linear model framework for PCA/PLS analysis of ANOVA decomposition on Designed Multivariate Experiments in R
PDF		Reference Manual
Text		NEWS

Details

biocViews	Cancer, DifferentialExpression, ExperimentData, Microarray, OneChannel, Software, TwoChannel, Visualization
Version	1.26.0
In Bioconductor since	BioC 2.11 (R-2.15) (7 years)
License	GPL (>=2)
Depends	R (>= 2.14.1), pls, stemHypoxia
Imports	stats, methods, limma
LinkingTo
Suggests
SystemRequirements
Enhances	parallel
URL	http://www.bdmg.com.ar/?page_id=38
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	lmdme_1.26.0.tar.gz
Windows Binary	lmdme_1.26.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	lmdme_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/lmdme
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/lmdme
Package Short Url	https://bioconductor.org/packages/lmdme/
Package Downloads Report	Download Stats