maser

DOI: 10.18129/B9.bioc.maser    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see maser.

Mapping Alternative Splicing Events to pRoteins

Bioconductor version: 3.9

This package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events generated by rMATS.

Author: Diogo F.T. Veiga [aut, cre]

Maintainer: Diogo F.T. Veiga <diogof.veiga at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("maser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("maser")

 

HTML	R Script	Introduction
HTML	R Script	Mapping protein features to splicing events
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	AlternativeSplicing, Software, Transcriptomics, Visualization
Version	1.2.0
In Bioconductor since	BioC 3.8 (R-3.5) (1 year)
License	MIT + file LICENSE
Depends	R (>= 3.5.0), ggplot2, GenomicRanges
Imports	dplyr, rtracklayer, reshape2, Gviz, DT, GenomeInfoDb, stats, utils, IRanges, methods, BiocGenerics, parallel, data.table
LinkingTo
Suggests	testthat, knitr, rmarkdown, BiocStyle, AnnotationHub
SystemRequirements
Enhances
URL	https://github.com/DiogoVeiga/maser
BugReports	https://github.com/DiogoVeiga/maser/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	maser_1.2.0.tar.gz
Windows Binary	maser_1.2.0.zip
Mac OS X 10.11 (El Capitan)	maser_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/maser
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/maser
Package Short Url	https://bioconductor.org/packages/maser/
Package Downloads Report	Download Stats