meshr

DOI: 10.18129/B9.bioc.meshr    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see meshr.

Tools for conducting enrichment analysis of MeSH

Bioconductor version: 3.9

A set of annotation maps describing the entire MeSH assembled using data from MeSH.

Author: Koki Tsuyuzaki, Itoshi Nikaido, Gota Morota

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("meshr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("meshr")

 

PDF	R Script	MeSH.db
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, AnnotationData, Bioinformatics, FunctionalAnnotation, MeSHDb, MultipleComparisons, Software, Statistics
Version	1.20.0
In Bioconductor since	BioC 2.14 (R-3.1) (5.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.1)
Imports	methods, stats, utils, fdrtool, MeSH.db, MeSH.AOR.db, MeSH.PCR.db, MeSHDbi, MeSH.Hsa.eg.db, MeSH.Aca.eg.db, MeSH.Bsu.168.eg.db, MeSH.Syn.eg.db, cummeRbund, org.Hs.eg.db, Category, S4Vectors, BiocGenerics, RSQLite
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Depends On Me
Imports Me	scTensor
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	meshr_1.20.0.tar.gz
Windows Binary	meshr_1.20.0.zip
Mac OS X 10.11 (El Capitan)	meshr_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/meshr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/meshr
Package Short Url	https://bioconductor.org/packages/meshr/
Package Downloads Report	Download Stats