netprioR

DOI: 10.18129/B9.bioc.netprioR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see netprioR.

A model for network-based prioritisation of genes

Bioconductor version: 3.9

A model for semi-supervised prioritisation of genes integrating network data, phenotypes and additional prior knowledge about TP and TN gene labels from the literature or experts.

Author: Fabian Schmich

Maintainer: Fabian Schmich <fabian.schmich at bsse.ethz.ch>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netprioR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netprioR")

 

HTML	R Script	netprioR Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, ImmunoOncology, Network, Preprocessing, Software
Version	1.10.0
In Bioconductor since	BioC 3.4 (R-3.3) (3 years)
License	GPL-3
Depends	methods, graphics, R (>= 3.3)
Imports	stats, Matrix, dplyr, doParallel, foreach, parallel, sparseMVN, ggplot2, gridExtra, pROC
LinkingTo
Suggests	knitr, BiocStyle, pander
SystemRequirements
Enhances
URL	http://bioconductor.org/packages/netprioR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	netprioR_1.10.0.tar.gz
Windows Binary	netprioR_1.10.0.zip
Mac OS X 10.11 (El Capitan)	netprioR_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/netprioR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/netprioR
Package Short Url	https://bioconductor.org/packages/netprioR/
Package Downloads Report	Download Stats