panelcn.mops

DOI: 10.18129/B9.bioc.panelcn.mops    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see panelcn.mops.

CNV detection tool for targeted NGS panel data

Bioconductor version: 3.9

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

Author: Verena Haunschmid, Gundula Povysil

Maintainer: Gundula Povysil <povysil at bioinf.jku.at>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("panelcn.mops")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("panelcn.mops")

 

PDF	R Script	panelcn.mops: Manual for the R package
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection
Version	1.6.1
In Bioconductor since	BioC 3.6 (R-3.4) (2 years)
License	LGPL (>= 2.0)
Depends	R (>= 3.4), cn.mops, methods, utils, stats, graphics
Imports	GenomicRanges, Rsamtools, IRanges, S4Vectors, GenomeInfoDb, grDevices
LinkingTo
Suggests	knitr, rmarkdown, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	CopyNumberPlots
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	panelcn.mops_1.6.1.tar.gz
Windows Binary	panelcn.mops_1.6.1.zip
Mac OS X 10.11 (El Capitan)	panelcn.mops_1.6.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/panelcn.mops
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/panelcn.mops
Package Short Url	https://bioconductor.org/packages/panelcn.mops/
Package Downloads Report	Download Stats