plethy

DOI: 10.18129/B9.bioc.plethy    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see plethy.

R framework for exploration and analysis of respirometry data

Bioconductor version: 3.9

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]

Maintainer: Daniel Bottomly <bottomly at ohsu.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plethy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plethy")

 

PDF	R Script	plethy
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews
Version	1.22.0
In Bioconductor since	BioC 2.13 (R-3.0) (6 years)
License	GPL-3
Depends	R (>= 3.1.0), methods, DBI (>= 0.5-1), RSQLite (>= 1.1), BiocGenerics, S4Vectors
Imports	Streamer, IRanges, reshape2, plyr, RColorBrewer, ggplot2, Biobase
LinkingTo
Suggests	RUnit, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	plethy_1.22.0.tar.gz
Windows Binary	plethy_1.22.0.zip
Mac OS X 10.11 (El Capitan)	plethy_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/plethy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plethy
Package Short Url	https://bioconductor.org/packages/plethy/
Package Downloads Report	Download Stats